Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
Source: http://www.broadinstitute.org/igv/projects/downloads
Files-Excluded:
    igv.jar
    batik-codec.jar
    goby-io-igv.jar
    igv.bat
    igv.command
    lib/Jama-*
    lib/batik*
    lib/commons*
    lib/concurrent*
    lib/guava*
    lib/jargs*
    lib/jcommon*
    lib/jfreechart*
    lib/junit-*
    lib/log4j-*
    lib/sam-*
    lib/swing-layout-*
    lib/xml-apis-*
    lib/Absolute*
    lib/bcprov*
    lib/jgrapht*
    lib/jide-oss-*
    lib/cofoja*
Disclamer: This package is not part of the Debian operating system.
 The igv source and binary Debian packages are part of the “non-free” area in
 our archive. The packages in this area are not part of the Debian system,
 although they have been configured for use with Debian. We nevertheless support
 the use of the igv source and binary Debian packages and provide infrastructure
 for non-free packages (such as our bug tracking system and mailing lists).

Files: *
Copyright: 2009 The Broad Institute, Inc. and the Massachusetts Institute of Technology
License: LGPL-2.1
 See `/usr/share/common-licenses/LGPL-2.1'.

Files: lib/goby-io-igv.jar
Copyright: 2012 Campagne Laboratory, Weill Cornell Medical College
License: LGPL-3
 See `/usr/share/common-licenses/LGPL-3'.


Files: src/org/j3d/io/EndianConverter.java
Copyright: 2001, 2002 Dipl. Ing. P. Szawlowski
License: LGPL-2.1
 See `/usr/share/common-licenses/LGPL-2.1'.

Files: lib/jlfgr-1_0.jar
Copyright: 2000 by Sun Microsystems, Inc.
License: other
 Sun grants you ("Licensee") a non-exclusive,
 royalty free, license to use, and redistribute
 this software graphics artwork, as individual
 graphics or as a collection, as part of software
 code or programs that you develop, provided that
 i) this copyright notice and license accompany
 the software graphics artwork; and ii) you do not
 utilize the software graphics artwork in a manner
 which is disparaging to Sun. Unless enforcement
 is prohibited by applicable law, you may not
 modify the graphics, and must use them true to
 color and unmodified in every way.
 .
 This software graphics artwork is provided "AS
 IS," without a warranty of any kind. ALL EXPRESS
 OR IMPLIED CONDITIONS, REPRESENTATIONS AND
 WARRANTIES, INCLUDING ANY IMPLIED WARRANTY OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE
 OR NON-INFRINGEMENT, ARE HEREBY EXCLUDED. SUN AND
 ITS LICENSORS SHALL NOT BE LIABLE FOR ANY DAMAGES
 SUFFERED BY LICENSEE AS A RESULT OF USING,
 MODIFYING OR DISTRIBUTING THE SOFTWARE GRAPHICS
 ARTWORK.
 .
 IN NO EVENT WILL SUN OR ITS LICENSORS BE LIABLE
 FOR ANY LOST REVENUE, PROFIT OR DATA, OR FOR
 DIRECT, INDIRECT, SPECIAL, CONSEQUENTIAL,
 INCIDENTAL OR PUNITIVE DAMAGES, HOWEVER CAUSED
 AND REGARDLESS OF THE THEORY OF LIABILITY,
 ARISING OUT OF THE USE OF OR INABILITY TO USE
 SOFTWARE GRAPHICS ARTWORK, EVEN IF SUN HAS BEEN
 ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.
 .
 If any of the above provisions are held to be in
 violation of applicable law, void, or
 unenforceable in any jurisdiction, then such
 provisions are waived to the extent necessary for
 this Disclaimer to be otherwise enforceable in
 such jurisdiction.

Files: lib/jide*
Copyright: 2002-2010 JIDE Software, Inc
License: other
 SOFTWARE LICENSE AGREEMENT FOR JIDE SOFTWARE, INC.'S PRODUCTS
 .
 IMPORTANT - READ CAREFULLY: This JIDE Software, Inc. ("JIDE")
 Software License Agreement ("SLA") is a legal agreement between you
 (an individual developer of software applications) and JIDE for the
 JIDE software product accompanying this SLA, which includes computer
 software and may include associated source code, media, printed
 materials, and "on-line" or electronic documentation ("SOFTWARE
 PRODUCT"). By installing, copying, or otherwise using the SOFTWARE
 PRODUCT, you agree to be bound by the terms of this SLA. If you do
 not agree to the terms of this SLA, do not install, use, distribute
 in any manner, or replicate in any manner, any part, file or portion
 of the SOFTWARE PRODUCT.
 .
 The SOFTWARE PRODUCT is protected by copyright laws and international
 copyright treaties, as well as other intellectual property laws and
 treaties. The SOFTWARE PRODUCT is licensed, not sold.
 .
 RIGOROUS ENFORCEMENT OF INTELLECTUAL PROPERTY RIGHTS. If the licensed
 right of use for this SOFTWARE PRODUCT is purchased by you with any
 intent to reverse engineer, decompile, create derivative works, and
 the exploitation or unauthorized transfer of, any JIDE intellectual
 property and trade secrets, to include any exposed methods or source
 code where provided, no licensed right of use shall exist, and any
 products created as a result shall be judged illegal by definition of
 all applicable law. Any sale or resale of intellectual property or
 created derivatives so obtained will be prosecuted to the fullest
 extent of all local, federal and international law.
 .
 GRANT OF LICENSE. This SLA, if legally executed as defined herein,
 licenses and so grants you the following rights:
 .
 Single Developer License. Single Developer License allows an
 individual developer to use APIs ("Application Programming
 Interface") provided by SOFTWARE PRODUCT in any number of projects
 that he or she is working on. A Single Developer License for the
 SOFTWARE PRODUCT may not be shared or used by more than one
 individual developer. In a project that uses the SOFTWARE PRODUCT,
 each individual developer on the project requires a separate Single
 Developer License as long as they need to access JIDE API.
 .
 Deployment License. If either case below is true, in addition to the
 developer licenses you purchased, you need to purchase deployment
 licenses.
 .
 You exposed the API (application program interface) provided by JIDE
 to your end users. That is your end user will use our APIs directly
 to create application through the purchase of your product which
 includes JIDE.
 .
 The number of your application deployments is larger than 1000 times
 of the number of developer licenses you purchased. And you are not
 willing to show JIDE name and/or logo in about dialog, or splash
 screen or any other places where users can easily notice.
 .
 Source Code License. In addition to the license and rights granted
 above, JIDE grants you the right to use and modify the JIDE source
 provided you licensed source code. Different from developer license,
 source code license is licensed to a team. Each team only needs to
 purchase one copy of source code license and share it among those
 developers who have their own Single Developer License.
 .
 JIDE shall retain all right, title and interest in and to all
 updates, modifications, enhancements and derivative works, in whole
 or in part, of the JIDE Source Code created by you, including all
 copyrights subsisting therein, to the extent such modifications,
 enhancements or derivative works contain copyrightable code or
 expression derived from the JIDE source code; provided, however, that
 JIDE grants to you a fully-paid, royalty free license, to use copy
 and modify such updates, modifications, enhancements and derivative
 works or copies thereof for use as authorized in this LICENSE.
 .
 You may not distribute the JIDE source code, or any modified version
 or derivative work of the JIDE source code, in source code form.
 .
 JIDE require all developers in your project who plan to access JIDE
 source code signing on the source code license. As long as they
 signed, they become registered developers. An alternative to this is
 to let a delegate signs source code license as an organization. The
 delegate will be responsible for letting other developers who plan to
 access the source code reviewing this license agreement first before
 releasing them the access.
 .
 The source code contained herein and in related files is provided to
 the registered developer for the purposes of education and
 troubleshooting. Under no circumstances may any portion of the source
 code be distributed, disclosed or otherwise made available to any
 third party without the express written consent of JIDE.
 .
 Under no circumstances may the source code be used in whole or in
 part, as the basis for creating a product that provides the same, or
 substantially the same, functionality as any JIDE products.
 .
 The registered developer acknowledges that this source code contains
 valuable and proprietary trade secrets of JIDE. The registered
 developer agrees to expend every effort to insure its
 confidentiality. For example, under no circumstances may the
 registered developer allow to put the source code on an internal
 network where he or she has no control.
 .
 Due to the insecurity of Java byte-code, if you plan to use classes
 that built from the source code directly, you must agree to obfuscate
 the classes before distributing it to your customers.
 .
 SOURCE CODE IS SOLD AS IS. JIDE DOES NOT PROVIDE ANY TECHNICAL
 SUPPORT FOR SOURCE CODE.
 .
 DESCRIPTION OF OTHER RIGHTS AND LIMITATIONS.
 .
 Not for Resale Software. If the SOFTWARE PRODUCT is labeled and
 provided as "Not for Resale" or "NFR", then, notwithstanding other
 sections of this SLA, you may not resell, distribute, or otherwise
 transfer for value or benefit in any manner, the SOFTWARE PRODUCT or
 any derivative work using the SOFTWARE PRODUCT. You may not transfer,
 rent, lease, lend, copy, modify, translate, sublicense, time-share or
 electronically transmit the SOFTWARE PRODUCT, media or documentation.
 This also applies to any and all intermediate files, source code, and
 compiled executables.
 .
 Limitations on Reverse Engineering, Decompilation, and Disassembly.
 You may not reverse engineer, decompile, create derivative works,
 modify, translate, or disassemble the SOFTWARE PRODUCT, and only to
 the extent that such activity is expressly permitted by applicable
 law notwithstanding this limitation. You agree to take all
 reasonable, legal and appropriate measures to prohibit the illegal
 dissemination of the SOFTWARE PRODUCT or any of its constituent parts
 and redistributables to the fullest extent of all applicable local,
 US Codes and International Laws and Treaties regarding
 anti-circumvention, including but not limited to, the Geneva and
 Berne World Intellectual Property Organization (WIPO) Diplomatic
 Conferences.
 .
 Rental. You may not rent, lease, or lend the SOFTWARE PRODUCT.
 .
 Separation of Components, Their Constituent Parts and
 Redistributables. The SOFTWARE PRODUCT is licensed as a single
 product. The SOFTWARE PRODUCT and its constituent parts and any
 provided redistributables may not be reverse engineered, decompiled,
 disassembled, nor placed for distribution, sale, or resale as
 individual creations by you or any individual not expressly given
 such permission by JIDE. The provision of source code, if included
 with the SOFTWARE PRODUCT, does not constitute transfer of any legal
 rights to such code, and resale or distribution of all or any portion
 of all source code and intellectual property will be prosecuted to
 the fullest extent of all applicable local, federal and international
 laws. All JIDE libraries, source code, redistributables and other
 files remain JIDE's exclusive property. You may not distribute any
 files, except those that JIDE has expressly designated as
 Redistributable.
 .
 The SOFTWARE PRODUCT may include certain files ("Redistributables")
 intended for distribution by you to the users of programs you create.
 Redistributables include jar file (or class files if you intend to
 package all JIDE classes into your own jar). Developer Guide of
 SOFTWARE PRODUCT (if any) or any other documents (such as javadoc)
 which are intended to teach you how to use the SOFTWARE PRODUCT, and
 sample code are not considered as redistributables. Subject to all of
 the terms and conditions in this SLA, you may reproduce and
 distribute exact copies of the Redistributables, provided that such
 copies are made from the original copy of the SOFTWARE PRODUCT or the
 copy transferred to a hard disk. Copies of Redistributables may only
 be distributed with and for the sole purpose of executing application
 programs permitted under this SLA that you have created using the
 SOFTWARE PRODUCT. You may reformat or recombine the original
 distribution format of redistributables provided by JIDE. However
 JIDE will not support or have any liability for such use.
 .
 Installation and Use. The license granted in this SLA for you to
 create your own compiled programs and distribute your programs and
 the Redistributables (if any), is subject to all of the following
 conditions:
 .
 All copies of the programs you create must bear a valid copyright
 notice, either your own or the JIDE copyright notice that appears on
 the SOFTWARE PRODUCT.
 .
 You may not remove or alter any JIDE copyright, trademark or other
 proprietary rights notice contained in any portion of JIDE libraries,
 source code, Redistributables or other files that bear such a notice.
 .
 JIDE provides no warranty at all to any person, and you will remain
 solely responsible to anyone receiving your programs for support,
 service, upgrades, or technical or other assistance, and such
 recipients will have no right to contact JIDE for such services or
 assistance.
 .
 Your programs containing the SOFTWARE PRODUCT must be written using a
 licensed, registered copy of the SOFTWARE PRODUCT.
 .
 Your programs must add primary and substantial functionality, and may
 not be merely a set or subset of any of the libraries, code,
 Redistributables or other files of the SOFTWARE PRODUCT.
 .
 Support Services. JIDE may provide you with support services related
 to the SOFTWARE PRODUCT ("Support Services"). Use of Support Services
 is governed by JIDE policies and programs described in the user
 manual, in on-line documentation and/or other JIDE provided
 materials. Any supplemental software code provided to you as part of
 the Support Services shall be considered part of the SOFTWARE PRODUCT
 and subject to the terms and conditions of this SLA. With respect to
 technical information you provide to JIDE as part of the Support
 Services, JIDE may use such information for its business purposes,
 including for product support and development.
 .
 Software Transfer. You may NOT permanently or temporarily transfer
 ANY of your rights under this SLA to any individual or entity.
 Regardless of any modifications which you make and regardless of how
 you might compile, link, and/or package your programs, under no
 circumstances may the libraries, redistributables, and/or other files
 of the SOFTWARE PRODUCT (including any portions thereof) be used for
 developing programs by anyone other than you. Only you as the
 licensed end user have the right to use the libraries,
 redistributables, or other files of the SOFTWARE PRODUCT (or any
 portions thereof) for developing programs created with the SOFTWARE
 PRODUCT. In particular, you may not share copies of the
 Redistributables with other co-developers. If you leave the company
 or go to another group where JIDE is no longer used, you may transfer
 the license to another developer within the team. After the transfer,
 you are no longer allowed to use SOFTWARE PRODUCT.
 .
 Termination. Without prejudice to any other rights or remedies, JIDE
 will terminate this SLA upon your failure to comply with all the
 terms and conditions of this SLA. In such event, you must destroy all
 copies of the SOFTWARE PRODUCT and all of its component parts
 including any related documentation, and must remove ANY and ALL use
 of such technology with the next generally available release from any
 applications using technology contained in the SOFTWARE PRODUCT
 developed by you, whether in native, altered or compiled state.
 .
 Time Limitation: There is no time limitation on using the SOFTWARE
 PRODUCT as long as you don't violate this license agreement.
 .
 UPGRADES. If the SOFTWARE PRODUCT is labeled as an upgrade, you must
 be properly licensed to use the SOFTWARE PRODUCT identified by JIDE
 as being eligible for the upgrade in order to use the SOFTWARE
 PRODUCT. A SOFTWARE PRODUCT labeled as an upgrade replaces and/or
 supplements the SOFTWARE PRODUCT that formed the basis for your
 eligibility for the upgrade, and together constitute a single
 SOFTWARE PRODUCT. You may use the resulting upgraded SOFTWARE PRODUCT
 only in accordance with all the terms of this SLA.
 .
 COPYRIGHT. All title and copyrights in and to the SOFTWARE PRODUCT
 (including but not limited to any images, demos, source code,
 intermediate files, packages, photographs, animations, video, audio,
 music, text, and "applets" incorporated into the SOFTWARE PRODUCT),
 the accompanying printed materials, and any copies of the SOFTWARE
 PRODUCT are owned by JIDE or its subsidiaries. The SOFTWARE PRODUCT
 is protected by copyright laws and international treaty provisions.
 Therefore, you must treat the SOFTWARE PRODUCT like any other
 copyrighted material except that you may install the SOFTWARE PRODUCT
 for use by you, a single developer. You may not copy any printed
 materials accompanying the SOFTWARE PRODUCT.
 .
 GENERAL PROVISIONS. This SLA may only be modified in writing signed
 by you and an authorized officer of JIDE. If any provision of this
 SLA is found void or unenforceable, the remainder will remain valid
 and enforceable according to its terms.
 .
 MISCELLANEOUS. If you acquired this product in the United States,
 this SLA is governed by the laws of the State of CA.
 .
 If this SOFTWARE PRODUCT was acquired outside the United States, then
 you, agree and ascend to the adherence to all applicable
 international treaties regarding copyright and intellectual property
 rights which shall also apply. In addition, you agree that any local
 law(s) to the benefit and protection of JIDE ownership of, and
 interest in, its intellectual property and right of recovery for
 damages thereto will also apply.
 .
 Should you have any questions concerning this SLA, or if you desire
 to contact JIDE for any reason, please contact us via our support web
 pages at http://www.jidesoft.com/.
 .
 NO WARRANTIES. JIDE EXPRESSLY DISCLAIMS ANY WARRANTY FOR THE SOFTWARE
 PRODUCT. THE PRODUCT AND ANY RELATED DOCUMENTATION IS PROVIDED "AS
 IS" WITHOUT WARRANTY OF ANY KIND, EITHER EXPRESS OR IMPLIED,
 INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF
 MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE, OR
 NONINFRINGEMENT. THE ENTIRE RISK ARISING OUT OF USE OR PERFORMANCE OF
 THE PRODUCT REMAINS WITH YOU.
 .
 LIMITATION OF LIABILITY. TO THE MAXIMUM EXTENT PERMITTED BY
 APPLICABLE LAW, IN NO EVENT SHALL JIDE OR ITS SUPPLIERS BE LIABLE FOR
 ANY SPECIAL, INCIDENTAL, INDIRECT, OR CONSEQUENTIAL DAMAGES
 WHATSOEVER (INCLUDING, WITHOUT LIMITATION, DAMAGES FOR LOSS OF
 BUSINESS PROFITS, BUSINESS INTERRUPTION, LOSS OF BUSINESS
 INFORMATION, ANY OTHER PECUNIARY LOSS, ATTORNEY FEES AND COURT COSTS)
 ARISING OUT OF THE USE OF OR INABILITY TO USE THE SOFTWARE PRODUCT OR
 THE PROVISION OF OR FAILURE TO PROVIDE SUPPORT SERVICES, EVEN IF JIDE
 HAS BEEN ADVISED OF THE POSSIBILITY OF SUCH DAMAGES.

Files: debian/*
Copyright: 2010 Shaun Jackman <sjackman@debian.org>
License: ISC
 Permission to use, copy, modify, and/or distribute this software for any
 purpose with or without fee is hereby granted, provided that the above
 copyright notice and this permission notice appear in all copies.

