#!/bin/sh -e

pkg="atac"

if [ "$AUTOPKGTEST_TMP" = "" ]; then
    AUTOPKGTEST_TMP=$(mktemp -d /tmp/${pkg}-test.XXXXXX)
    trap "rm -rf $AUTOPKGTEST_TMP" 0 INT QUIT ABRT PIPE TERM
fi
cd $AUTOPKGTEST_TMP
cp -a /usr/share/doc/${pkg}/test_data.tar.gz .
tar -xzvf *.tar.gz; rm *.tar.gz

# Run atac:
atac -meryldir meryldir -dir results -id1 Ecoli -seq1 GCF_000195995.1_ASM19599v1_genomic.fna \
	-id2 Sent -seq2 GCF_000005845.2_ASM584v2_genomic.fna
