
   If you use MCL software in your research, cite it as you would cite
   a journal or a book. This includes papers published in regular or
   electronic journals, usage of MCL as a back-end to a database that
   is accessible via a web interface, or inclusion of MCL in a larger
   framework of software that is distributed for other people to use.
   Include at least one of the following citations:

      Stijn van Dongen, Graph Clustering by Flow Simulation.
      PhD thesis, University of Utrecht, May 2000.
      ( http://www.library.uu.nl/digiarchief/dip/diss/1895620/inhoud.htm )

      Stijn van Dongen. A cluster algorithm for graphs.  Technical Report
      INS-R0010, National Research Institute for Mathematics and Computer
      Science in the Netherlands, Amsterdam, May 2000.
      ( http://www.cwi.nl/ftp/CWIreports/INS/INS-R0010.ps.Z )

   and proper attributions to mcl's home http://micans.org/mcl/
   and its author, Stijn van Dongen.
   The publications listed above can be retrieved from the preceding URL.

   Do this also if you are using some wrapper around mcl such as
   the (mcl) blast package or the tribe module.


   This directory contains libraries and source code implementing the
   Markov Cluster algorithm, and additional utilities for manipulating
   sparse matrices (the essential data structure in the MCL algorithm)
   and conducting cluster experiments.

   For additional information on the MCL algorithm, see the pointers
   found at http://micans.org/mcl/.

   The files util/pool.c and util/pool.h are copyright 2001-2003 Jan van
   der Steen, j <stop> van <stop> der <stop> steen <at> chello <stop>
   nl.

   All files in contrib/tribe are copyright 2002-2003 EMBL-EBI, and authored
   by Anton Enright, anton <at> ebi <stop> ac <stop> uk.

   All other C source and header files (with '.c' and '.h' extensions)
   and all ZOEM source files (with '.azm' and '.zmm' extensions) in the
   subdirectories of this directory are copyright (c) 1999-2003 Stijn
   van Dongen, stijn <at> micans <stop> org.

   This program is free software; you can redistribute it and/or modify
   it under the terms of the GNU General Public License as published by
   the Free Software Foundation; either version 2 of the License, or (at
   your option) any later version.

   This program is distributed in the hope that it will be useful,
   but WITHOUT ANY WARRANTY; without even the implied warranty of
   MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
   General Public License for more details.

   You should have received a copy of the GNU General Public License
   along with this program; if not, write to the Free Software
   Foundation, Inc., 59 Temple Place, Suite 330, Boston, MA 02111-1307
   USA

